Tomato (Solanum lycopersicum) is an important fruit and vegetable crop with rich genetic diversity. Molbreeding provides advanced ready-to-use GBTS panels developed from diverse tomato germplasm. These panels capture numerous trait-associated markers and offer reliable, cost-effective genotyping for genetic analysis, traits discovery, and the development of improved tomato varieties.
For projects with specific genotyping requirements, custom GBTS panels can be developed. Contact us to discuss a solution tailored to your breeding program.
Genotyping by Targeted Sequencing (GBTS) Panels - Ready to use*
Reference genome： SL 4.0 (GCA_000188115.5, Solanum lycopersicum, Heinz 1706)
*A ready-to-use GBTS panel is fully developed and assembled, allowing you to submit DNA or leaf tissue samples directly for rapid genotyping and data delivery. All panels can be customized with additional markers for specific traits or loci. To include your loci of interest, please contact us.
- Product Highlight
Enriched polymorphism selection and a broad spectrum of variation
Our panels provide comprehensive coverage of diverse genetic variations across germplasm resources.
Powerful functionality
Our GBTS panels are designed with an extensive array of trait-associated markers targeting critical traits in tomato breeding. They encompass vital aspects such as disease resistance, stress tolerance, fruit quality, and growth characteristics. These panels are a valuable resource for enhancing tomato varieties with superior traits, supporting efficient breeding programs and driving innovation in horticulture.
Various density designed for different applications
Our ready-to-use tomato GBTS panels are designed with various, flexibly adjustable marker densities, from high to low, to cater to your diverse application scenarios, truly optimizing time and cost. We offer flexible marker number adjustment and upgrade services, ensuring your research remains at the forefront.
- Report Visualization
GenoPlexs® Express Tomato 1K Panel
The GenoPlex® Express Tomato 1K Panel includes 1,046 core SNPs and 17 InDels, including 170 trait markers across 32 key trait categories. In recent commercial project analyses, the panel demonstrates stable sequencing performance:
Alignment Rate: 96.08%
Coverage Uniformity 20%*: 97.56%
Mean Depth of reads: 403.39
Target SNP Call Rate: 98.92%
GenoBaits® Tomato 5K Panel
GenoBaits Tomato 5K Panel includes 4,146 core SNPs, 1,211 mSNPs, and 9 InDels, integrating 112 trait-associated markers across 21 traits to support more detailed genome-wide diversity assessment. The panel shows technical metrics across recent projects:
Alignment Rate: 97.23%
Coverage Uniformity 20%*: 97.74%
Mean Depth of reads: 130.96
Target SNP Call Rate: 98.20%
GenoBaits® Tomato 10K Panel
The High-Density panel contains 11,491 SNPs and 35 InDels, offering the high-resolution and broadest trait representation with 474 markers associated with 34 traits for advanced breeding decisions.
- Alignment Rate: 95.05%
- Coverage Uniformity 20%*: 95.21%
- Mean Depth of reads: 50.20
- Target SNP Call Rate: 98.23%
- Validation of GenoBaits 10K Tomato Panel
To validate the GenoBaits Tomato 10K Panel, the corresponding SNP loci are extracted from 71 public whole-genome resequencing (WGS) datasets, including 29 accessions from PRJEB5235 and 42 accessions from PRJNA259308. These samples encompass wild relatives, semi-domesticated types, and cultivated tomatoes.
Using the retrieved 10K SNPs, a phylogenetic tree and principal component analysis (PCA) are generated to assess the panel’s ability to recover known evolutionary relationships within the tomato lineage.
- Published Literatures
- Application
- Germplasm Identification and DNA fingerprint construction
- Marker-Assisted Backcross Selection
- Variety Identification and Parental Line Purification
- Genetic Diversity Analysis
- Genome-wide selection breeding
- Seed Purity Identification
- Functional Gene Mining and Identification
- (GWAS/QTL/BSA)
- Service Process
